ASOkai

User Guide

Installation
Getting started
Running the pipeline
Analyses

Pipeline Reference

Steps
Tasks
Workflows
- Standard workflow

API Reference

Analysis
Antisense
- Therapeutics
- Candidate design
  - Candidate generation
  - Binding
Biochemistry
- Chemistry
  - Chemistry
- Mechanisms of action
  - MechanismOfAction
Sites
- Site types
Targets
- Target genes
  - TargetGene
- Target construction
  - create_target_gene()
Types
Utils

Contributor Guide

Adding an analysis step
Pipeline components
Internal steps
- Built-in internal steps
  - Identify potential repeated sites

Project Info

License
Contributors

ASOkai

Sites
Edit on GitHub

Sites

The site hierarchy describes sequence locations in different coordinate systems.

Site types

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© Copyright 2026, Alexander Schliep. Last updated on 2026-10-12.

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