Chemistry

Chemistry is an optional oligonucleotide attachment with a stable ID. The representation of individual nucleotide modifications is deferred.

class ASOkai.Biochemistry.Chemistry(id, **kwargs)[source]

Bases: Serializable

Optional oligonucleotide chemistry with a stable design identity.

The representation of individual nucleotide modifications is deferred.

Parameters:: id (str)

id: str

File contract

This is the JSON record ASOkai stores for Chemistry. A JSON file has a root value and an objects table. Objects used once are inline; repeatedly used objects move to the table and are linked by references. Nested records follow their own class contracts.

The __class__ and __module__ fields identify the object type. ASOkai adds them when writing JSON; keep the fixed values shown below when supplying an input file yourself.

Example file

{
    "root": {
        "__class__": "Chemistry",
        "__module__": "ASOkai.Biochemistry._chemistry",
        "id": "example"
    },
    "objects": {}
}

Fields

JSON field	Details
`__class__`	Accepted value: `"Chemistry"` Requirement: Required; keep unchanged in input files Meaning: Identifies this JSON object as Chemistry. ASOkai writes it automatically.
`__module__`	Accepted value: `"ASOkai.Biochemistry._chemistry"` Requirement: Required; keep unchanged in input files Meaning: Tells ASOkai where Chemistry is defined. ASOkai writes it automatically.
`id`	Accepted value: string Requirement: Required Meaning: —